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"We strive for excellence and our ambition is to prevail at the frontier of academic and clinical research."

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What we do

Data analysis
  • Next generation sequencing (NGS):  DNA-seq, RNA-seq, ChIP-seq
  • Whole genome sequencing and exome sequencing
  • DNA microarrays and cDNA microarrays
  • Fluidigm
  • NanoString
  • Mass cytometry / CyTOF
  • Mass spectrometry
  • Metabolomics
  • De novo transcriptome assembly
  • Fusion gene search
  • Non-coding RNA (ncRNA) (including lincRNA and antisense transcripts)
  • GWAS (genome-wide association studies)
  • Copy number variation (CNV)
  • Networks, graphs, and minimal spanning trees
Copy number variation (CNV)
Biostatistics
  • Linear and logistic regression models
  • Bayesian regression models
  • Lasso, ridge, and elastic net penalised regression
  • Cross-validation
  • Biomarker identification and risk model development
  • Gap statistic
  • Correlation analysis
  • Clustering analysis (k-means, partitioning around medoids (PAM), hierarchical, et cetera)
  • ROC analysis
  • Principal components analysis (PCA) / Linear discriminant analysis (LDA)
  • Eigenvector and eigenvalue classification
Circos plot and clustering with compex heatmap
Training material / Workshops
  • Introduction to bioinformatics 2-day workshop
  • R Programming Language - extremely broad and includes topics as simple as basic statistics and as advanced as microarray analysis
  • Clinical genetics - everything that you need to know about NGS in the clinical diagnostic setting (focused on UK regulations and recommendations)
  • Introduction to UNIX and Linux
  • Next generation sequencing (NGS) analysis
  • Networks, graphs, and spanning trees
Clinical next generation sequencing (NGS) pipeline
Data mining
  • ClinVar
  • 1000 Genomes
  • International HapMap
  • GME (Greater Middle East)
  • COSMIC (Catalogue of Somatic Mutations in Cancer)
  • DAVID (Database for Annotation, Visualization, and Integrated Discovery)
  • dbSNP (Single Nucleotide Polymorphism database)
  • DGV (Database of Genomic Variants)
  • GO (Gene Ontology)
  • HGVS (Human Genome Variation Society)
  • HUGO (Human Genome Organisation)
  • KEGG (Kyoto Encyclopedia of Genes and Genomes)
  • NCBI (National Centre for Biotechnology Information)
  • TCGA (The Cancer Genome Atlas)
  • UCSC Genome Bioinformatics
  • UniProtKB/Swiss-Prot
Data mining